Package index

All functions

tp_check_input()

Check input for inference with TreePPL

tp_compile()

Compile for tp_run()

tp_compile_stored()

Provide model filenames compiled by user in base::tempdir()) using tp_write())

tp_data()

Import data for TreePPL program

tp_data_stored()

Provide data filenames stored by user in base::tempdir()) using tp_write())

tp_model()

Import model for TreePPL program

tp_model_name()

Provide normalized model names supported by treepplr

tp_model_stored()

Provide model filenames stored by user in base::tempdir()) using tp_write())

tp_parse()

Parse TreePPL json output

tp_parse_coin()

Parse TreePPL json coin output

tp_phyjson()

Create a phyjson object

tp_phyjson_list()

Convert a phyjson object to phyjson list

tp_phylo_2_phyjson()

Create a from a phylo object

tp_run()

Run a TreePPL program

tp_tempdir()

Provide normalized names and make return an tmp_dir.

tp_treeppl()

Compile and run a TreePPL program

tp_write()

Prepare input for tp_compile()