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Overview

treepplr is the R Interface to TreePPL, a probabilistic programming language for phylogenetics.

treepplr converts data to a format readable by TreePPL, reads the TreePPL output, and connects to downstream analyses in model-specific packages, such as the evolnets package for the host repertoire evolution model.

See the package’s documentation here.

Installation

You can install treepplr like so:

# install.packages("devtools")
# library(devtools)

devtools::install_github("treeppl/treepplr")