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full-model.tppl

function allTimesValidBranch​

Check if the branch is valid in the sense that the parasite has at least one host after each event in the ordered event sequence

function allTimesValidBranch(
  currRep: Int[], eventSeq: Event[], eventIndex: Int, nEvents: Int, nhosts: Int
) => Bool

function fullModelWeight​

This file contains functions for calculating the point wise density (excess) for the full model.

function fullModelWeight(
  nextIndex: Int,
  currRep: Int[],
  finalRep: Int[],
  currAge: Real,
  finalAge: Real,
  eventSeq: Event[],
  nEvents: Int,
  nhosts: Int,
  modelParams: ModelParams
) => Real

function getGainRate​

function getGainRate (
  repertoire: Int[],
  hostIndex: Int,
  modelParams: ModelParams
) => Real

function getLossRate​

function getLossRate(
  repertoire: Int[], hostIndex: Int, modelParams: ModelParams
) => Real

function getRate​

function getRate(currRep: Int[], nextEvent: Event, modelParams: ModelParams) => Real

function getTotalRate​

function getTotalRate(
  currRep: Int[], modelParams: ModelParams, nhosts: Int
) => Real