Package index

All functions

tp_TreePPL_json()

Convert a tppl_tree to TreePPL json str

tp_check_input()

Check input for inference with TreePPL

tp_compile()

Compile for tp_run()

tp_data()

Import data for TreePPL program

tp_list()

Create a flat list

tp_model()

Import a TreePPL model

tp_model_names()

Model names supported by treepplr

tp_parse()

Parse simple TreePPL json output

tp_parse_host_rep()

Parse TreePPL json output for host repertoire model

tp_phylo_2_TreePPL()

Convert phylo obj to TreePPL tree

tp_phylo_2_tppl_tree()

Convert phylo to a tppl_tree

tp_run()

Run a TreePPL program

tp_stored_compiled()

List of compiled models in base::tempdir

tp_stored_data()

Data file names stored by user in base::tempdir using tp_write

tp_stored_model()

Model file names stored by user in base::tempdir using tp_write

tp_tempdir()

Temporary directory for running treeppl

tp_treeppl()

Compile and run a TreePPL program

tp_write()

Prepare input for tp_compile()

tree_age_cumul()

Calculate age in a tppl_tree